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The eclipse.app wrapper doesn't behave as expected. If dragged into the dock and started, a second app icon is added to the dock for the running process. This would seem to suggest that the program that launches eclipse is not the apple wrapper but something else. The doc for packaging a java app in OS X can be found here: <http://developer.apple.com/documentation/Java/Conceptual/Jar_Bundler/ index.html>
*** This bug has been marked as a duplicate of 53260 ***