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build i0420-0800 - I have all Core plug-in projects in my workspace - I have all others in my Target Platform selected to be included in Java Search - I did a search for references to Plugin#getPluginPreferences() - search results only returned what was in my workspace + ant + update I would expect all references to be returned. Note that the Core projects require (some optionally) the ant and update plug-ins.
DJ, are you new here? :-) JDT/Core seems to need all the projects on the fake External Libraries project for search to references to work. *** This bug has been marked as a duplicate of 52667 ***
Errr...someone must have entered a bug report under my name. :-) Oh 239 references...that's a little better!