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+++ This bug was initially created as a clone of Bug #492486 +++ (Unlike Bug 492486, this covers the case where Apply is not pressed and only on GTK3) removing one of the items in the include path (using eclipse 4.5.2) removes all of the entries in the include path list.
New Gerrit change created: https://git.eclipse.org/r/72140
Gerrit change https://git.eclipse.org/r/72140 was merged to [master]. Commit: http://git.eclipse.org/c/cdt/org.eclipse.cdt.git/commit/?id=e091657eafa69252ce0777b83d6ef7560dacfd3b
*** Bug 492486 has been marked as a duplicate of this bug. ***