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This happened to me in several occasions, but I wasn't always sure why. But it is not surprising because currently only two out of five unsuccessful states are handled. I'd suggest show a warning for all of those states, including the name of the state, i.e. FAILED, STOPPED, ABORTED, UNCOMMITTED, CONFLICTS.
https://git.eclipse.org/r/#/c/50558/
org.eclipse.egit.ui.gitflow.FeatureRebaseHandlerTest.testRebase is failing with rebased patch.
Tests are now fixed.
Gerrit change https://git.eclipse.org/r/50558 was merged to [master]. Commit: http://git.eclipse.org/c/egit/egit.git/commit/?id=bcfcb1deca78c932f24c3cbc0c7358512b180ce3
merged the fix