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In the API, more precisely in class NattableModelManager, a method is missing to reload a table regarding its configuration. We expect a behavior similar to the content of the init() method. Could you provide such a method please ?
I added the bug 467706 as subtask, but I don't think than it fix your initial problem...
The first problem is when categories are hidden, changing the categories generate an empty table. (reproduced in Papyrus Luna on the tree table branch)
a method "Reload Table Editor" has been added in the popup menu of the table + a specific handler. A new method reloadNattableModelManager has been added into AbstractEMFNattableEditor. Fixed in commit c949fd24d3919c972b982879351fcb29341fb48c on branch master Fixed in commit c7446d5acac9456f4dae1bf9056a2297cd44ea31 on branch bugfixes:bugs/439888/filterInLuna102 This bug can be marked as closed fixed.
Commit 3d19dfda704a31d4565c632c0923407bfe17550f on branch master : improve the handler declaration for the reload method