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My .gitignore has the following: # IntelliJ **/.idea/copyright **/.idea/libraries **/.idea/scopes **/.idea/.name **/.idea/*.xml **/*.iml **/*.ipr **/*.iws **/out/ **/.idea_modules/ atlassian-ide-plugin.xml Just to pick one example, the rule "**/*.iml" correctly ignores *.iml files (can be directories) in this and any subdirectories below, tested with git command line and IntelliJ IDEA. However, in Eclipse/EGit , that rule only ignores *.iml in directories BELOW the current directory. However, the *.iml files in current directory are still included. Probably related to Bug 454672. org.eclipse.egit (3.4.1.201406201815-r) "Git Team Provider" [Starting] org.eclipse.egit.core (3.4.1.201406201815-r) "Git Team Provider Core" [Active] org.eclipse.egit.doc (3.4.1.201406201815-r) "Git Team Provider Documentation" [Resolved] org.eclipse.egit.github.core (3.4.0.201406110918-r) "EGit GitHub API Core" [Resolved] org.eclipse.egit.mylyn.ui (3.4.1.201406201815-r) "EGit Mylyn UI" [Active] org.eclipse.egit.ui (3.4.1.201406201815-r) "Git Team Provider UI" [Active] org.eclipse.jgit (3.4.1.201406201815-r) "JGit Core" [Active] org.eclipse.jgit.archive (3.4.1.201406201815-r) "JGit Archive Formats" [Starting]
please retry using jgit/egit 3.6.0, the ignore rule parser was rewritten (see bug 440732) to improve performance and also support ** patterns which weren't supported in earlier versions.
I've had same problem. After update to eGit 3.6.2. Everything works ok.
Fixed with bug 440732 *** This bug has been marked as a duplicate of bug 416348 ***