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If a plugin provides .options file, it is possible to enable tracing for this plugin via General > Tracing preference page. This bug covers adding the org.eclipse.ltk.core.refactoring plugin to this preference page to make it easier to debug problems in runtime without restarting Eclipse.
During investigation it turned out there are no debug flags defined in the .options file and the isDebugging method is not used anywhere. It means that there in no point in adding this bundle to the preference page. Marking the bug WONTFIX until there is a reason to do it, i.e. there are some debug options defined in .options file and they are used in code.