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The default project layout on the Orion server is flat but you can optionally set the value orion.file.layout=userTree to turn on organizing the layout of the projects. The orion.eclipse.org server is using userTree. When you add this setting to an orion.conf on a server against which the JUnit tests are run, many of the GitTests fail. The problem is with the line: IFileStore fsStore = getProjectStore(wp, "test"); where "test" is being used as the userId to find the project root. "test" is not actually the correct user id, so a user home is not found and the workspace root is used incorrectly within getProjectStore(). In the case of orion.file.layout=flat, the projects are actually under the workspace root so bug does not result in any test errors. In the case of orion.file.layout=userTree, the projects are organized in a hierarchy so the incorrect project root results in test failures.
Fixed with: http://git.eclipse.org/c/orion/org.eclipse.orion.server.git/commit/?id=f6ab4b91f315e3015d81f7c58c3417b6b3044f61 I also fixed the warnings in the file at the same time.
