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When I synchronize git with remote repository (origin/master) it shows some files that were commited but not yet pushed to remote repository. After pushing however they still remain there. Refreshing the view does not help either. I have to recreate synchronization with refs/remotes/origin/master to have them disappear successfully.
See bug 317411, which already has a solution that is in review. *** This bug has been marked as a duplicate of bug 317411 ***