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in looking at the source code for org.eclipse.emf.compare.ui.CompareTextDialog the saveRightContent method has the following line: final EObject obj = changeCompare.getLeftElement(); I think it should be "getRightElement()".
I can't believe we never took the time to look at this ... of course you are right :s. This is long overdue, but the fix will be included in Juno SR2 (EMF Compare 1.3.3).