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So are the two file trees in the "Move" dialog and "Open File" dialog. Reproducing steps: 1. Select a directory in the file system. 2. Right-click it and select "New->File". 3. The folder selection tree is empty. If you select "Move" in the second step, you'll see an empty file selection tree too.
Fixed at the commit: http://git.eclipse.org/c/tcf/org.eclipse.tcf.git/commit/?h=juno-refactoring&id=a1f77df444b8213f101e8fc02a40d39fab222a04