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Currently, running/debugging an OT/Equinox-enabled Eclipse application etc. requires that the fragment org.eclipse.objectteams.otequinox.hook be co-located next to org.eclipse.osgi. If both bundles are hosted in different git repos it is not convenient to setup a workspace that has both projects as subdirectories of a common root. OTOH, I just learned that the osgi.framework.extensions can also use an absolute path using the reference:file: prefix. The debug.adaptor should utilize this syntax to make these launches independent from the location of the mentioned bundles.
Fixed for 2.1 M4 via commit http://git.eclipse.org/c/objectteams/org.eclipse.objectteams.git/commit/?id=8c097521a0508b36fb84d5a2a02bc4a96ab0fdff plus some cleanup in http://git.eclipse.org/c/objectteams/org.eclipse.objectteams.git/commit/?id=ba8f3ce886dfcd18f0d659b801769591c3674242
Verified for 2.1 M4 using build 201112131519.