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By comparing the results of java and qvto-based map-2-gen transformation we have found that the QVTo bridge sometimes misses to create gmfgen::XXXEditPart's for inner mapping notions. In addition to the obvious problems, it also leads to the differences in the visualId's even for the nodes that are not directly affected by the problem.
Created attachment 205053 [details] UnitTest that showing that gmf qvto bridge does not create all necessary nodes in resulting gmfgen model
Created attachment 205209 [details] Patch that creates missing GenChildNode in QVTO transformation
Created attachment 205351 [details] Extended patch that fixes the number of GenChildNode created by QVTO bridge transformation
Created attachment 205442 [details] Patch to fix missing EditParts
Created attachment 205444 [details] Patch to fix missing inner EditParts
Fixed in 3.0M7.