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In the ORMetadata hierarchy some of the .equals methods are missing fields defined on the class. For example, NamedQueryMetadata is missing the newer m_lockMode. This could lead to a false positive when comparing 2 queries for equality. Thus no exception would be thrown saying that 2 queries have the same name and it could be confusing to the user when it is not clear which query actually gets used in the project. I have not searched the entire hierarchy, but noticed this particular field as missing.
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The Eclipselink project has moved to Github: https://github.com/eclipse-ee4j/eclipselink