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I was having a lot of difficulty with a transformation always reporting spurious errors about a incompatible loop body initializer after any edit. The errors would only go away after a project clean. I just found the problem. An imported String-to-String query had a warning about needing a traceability hook (a very irritating warning since I have never used traceability). When I put in a dummy argument, this warning went away, and the spurious errors in the importing transformation no longer occur.
I couldn't reproduce this, I'll assume you don't have any sample with which I could reproduce this since it's been so long without any reaction from our part. Closing for now.