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This is one of the regressions listed on bug 275153: createStructure is called twice for both sides on save: - once in UI thread via: org.eclipse.team.ui.mapping.SaveableComparison.doSave(IProgressMonitor) - once via org.eclipse.compare.internal.WorkerJob
We still plan to investigate it in 3.8. But since we do not have enough manpower we can continue in the next release.
This bug hasn't had any activity in quite some time. Maybe the problem got resolved, was a duplicate of something else, or became less pressing for some reason - or maybe it's still relevant but just hasn't been looked at yet. As such, we're closing this bug. If you have further information on the current state of the bug, please add it and reopen this bug. The information can be, for example, that the problem still occurs, that you still want the feature, that more information is needed, or that the bug is (for whatever reason) no longer relevant. -- The automated Eclipse Genie.
Perhaps this should be reopened?