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Build Identifier: 20110615-0604 If the merge of the whole model is made by the merge of successive and separated differences, in a different order as the order of the model elements to merge, the model fully merged may be different from the original one. Indeed, some references may not to have kept the original order. Reproducible: Always Steps to Reproduce: Examples on the TestSequenceDiagram JUnit test case from UML2 tests plugin. (after applying the patch of the bug 357916) -> actionExecutionSpecification_changeLeftTarget_merge
This has been fixed on master since.