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Created attachment 202868 [details] The model used to reproduced the issue. Take the attached model and open the IBD for Block0. Through the model explorer, move the port of Block0 (or of Block1) to Block2. The connector is removed from the diagram (OK), but it is still present in the model (NOK) even though it no more makes sense (it makes even less sense if it is the port of Block1 which is moved, because the end of the connector then has inconsistent "role" and "partWithPort" (the role is not owned by the type of the partWithPort).
Note: I also got several exception (apparently related to IBD outline view). Don't know if they are related to this issues or just a different issue with IBD: java.lang.IllegalArgumentException: Figure is not a child at org.eclipse.draw2d.Figure.remove(Figure.java:1264) at org.eclipse.draw2d.parts.ScrollableThumbnail.deactivate(ScrollableThumbnail.java:220) at org.eclipse.papyrus.outline.overview.OverviewComposite.dispose(OverviewComposite.java:94) at org.eclipse.papyrus.outline.DiagramOutline.refresh(DiagramOutline.java:325) at org.eclipse.papyrus.outline.DiagramOutline.selectionChanged(DiagramOutline.java:280) at org.eclipse.ui.internal.AbstractSelectionService.firePostSelection(AbstractSelectionService.java:179) at org.eclipse.ui.internal.AbstractSelectionService.setActivePart(AbstractSelectionService.java:289) at org.eclipse.ui.internal.WorkbenchPagePartList.fireActivePartChanged(WorkbenchPagePartList.java:60) at org.eclipse.ui.internal.PartList.setActivePart(PartList.java:136) at org.eclipse.ui.internal.WorkbenchPage.setActivePart(WorkbenchPage.java:3636) at org.eclipse.ui.internal.WorkbenchPage.requestActivation(WorkbenchPage.java:3159) at org.eclipse.ui.internal.PartPane.requestActivation(PartPane.java:279) at org.eclipse.ui.internal.EditorPane.requestActivation(EditorPane.java:98) at org.eclipse.ui.internal.PartPane.handleEvent(PartPane.java:237) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1053) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1077) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1058) at org.eclipse.swt.widgets.Shell.setActiveControl(Shell.java:1446) at org.eclipse.swt.widgets.Shell.WM_MOUSEACTIVATE(Shell.java:2319) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4555) at org.eclipse.swt.widgets.Canvas.windowProc(Canvas.java:341) at org.eclipse.swt.widgets.Decorations.windowProc(Decorations.java:1610) at org.eclipse.swt.widgets.Shell.windowProc(Shell.java:2060) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.DefWindowProcW(Native Method) at org.eclipse.swt.internal.win32.OS.DefWindowProc(OS.java:2525) at org.eclipse.swt.widgets.Scrollable.callWindowProc(Scrollable.java:80) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4606) at org.eclipse.swt.widgets.Canvas.windowProc(Canvas.java:341) at org.eclipse.swt.widgets.Display.windowProc(Display.java:4983) at org.eclipse.swt.internal.win32.OS.PeekMessageW(Native Method) at org.eclipse.swt.internal.win32.OS.PeekMessage(OS.java:3095) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3747) at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2696) at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2660) at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2494) at org.eclipse.ui.internal.Workbench$7.run(Workbench.java:674) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:667) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:123) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577) at org.eclipse.equinox.launcher.Main.run(Main.java:1410)
Fixed in branch (r5730) and trunk (r5733).