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If you have a portType with 2 operations and when you move 1 of the operations within the 'list' of operations of the port type, the operations inputs/outputs lose their message references (in memory). portType.getEOperations().move(newIndexLocation, operation1); This is a problem introduced as a result of the fix for bug 314929.
Created attachment 202345 [details] Patch includes JUnit org.eclipse.wst.ws_tests.feature org.eclipse.wst.wsdl org.eclipse.wst.wsdl.tests
All WSDL model junit tests pass.
Fix released to 3.2.5
See bug 356121 for 305p release.