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The p2 publisher includes all update sites from all referenced features in the generated p2 repository. That introduces a lot of bloat. The eclipse.cvs feature for instance, references the updates/3.5. Many indigo features still reference helios etc. The correct way to do this with Buckminster is to create a site feature and let that features 'sites to visit' determine what update sites that should be referenced in the generated repository. Buckminster should override the default p2 publisher behavior.
Fixed in http://git.eclipse.org/c/buckminster/buckminster.git/commit/?id=225061bd4c0c0169c2e7b6a2acfb3710d36d281e
I think this issue requires documentation.