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In DescriptionScannerInfoProvider.getValues(ICLanguageSettingPathEntry[]), workspace paths and relative paths are resolved according the project's getLocation(). Instead, it ought to use EFSExtension manager to figure out the paths using the project's location URI.
Created attachment 201287 [details] patch
Committed to cdt_7_0, cdt_8_0, and master.
*** cdt git genie on behalf of Chris Recoskie *** Bug 354451 - DescriptionScannerInfoProvider returns incorrect data for relative or workspace path in remote project [*] http://git.eclipse.org/c/cdt/org.eclipse.cdt.git/commit/?id=60dabd8ceb4ba3d9b1a3a427626de63d0c05713b
*** cdt git genie on behalf of Chris Recoskie *** Bug 354451 - DescriptionScannerInfoProvider returns incorrect data for relative or workspace path in remote project [*] http://git.eclipse.org/c/cdt/org.eclipse.cdt.git/commit/?id=bd1c208fff329d78a8b57955bc7e01b328cd0884
*** cdt git genie on behalf of Chris Recoskie *** Bug 354451 - DescriptionScannerInfoProvider returns incorrect data for relative or workspace path in remote project [*] http://git.eclipse.org/c/cdt/org.eclipse.cdt.git/commit/?id=d50d786746d83c4776f297f20a80fa6f99ffc18d