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The "project url" value that is present in the portal info for eclipse.jdt.ui is not shown anywhere in http://www.eclipse.org/projects/project_summary.php?projectid=eclipse.jdt.ui I would expect a link to http://www.eclipse.org/jdt/ui under "Project Web Site".
The "classic" summary pages get this information from the "Foundation" database, not the metadata (sigh). The newer pages (which I will switch over sometime before the end of August), attempt to find this information first from the metadata and then default to the Foundation database. In the meantime, I have updated the entry in the Foundation database.