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1.1.0.201106282013 In the Java Package Explorer, I right-click and choose Import. I then choose Projects from Git and this give me a wizard where I can select the repository. Double-clicking on a repository should be equivalent to selecting one and hitting Next. The same for other pages in the wizard.
Proposed fix pushed to https://git.eclipse.org/r/#/c/5256/
Double-clicking on a repository works now with 5b6af1c141e6aed0.