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version 1.1.0.201106282013 - I have several repositories - Preferences -> Team -> Git -> Configuration -> Repository Settings - set a property on one repository (e.g. branch.master.rebase=true) - switch to your other repositories and set the same property - hit OK to close the dialog When you open the dialog again, the key/value pair was only saved for one repository. Expected behaviour would be that all the changes were saved.
*** Bug 356626 has been marked as a duplicate of this bug. ***
Proposed fix pushed to: http://egit.eclipse.org/r/#change,4129
Merged as commit fc7539ee25fe269d1e3ebad59ff894e5f77c7c9e