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Due to the way Eugenia waits for a file to be produced, sometimes it keeps on waiting forever for a file. It's not too noticeable in a single-core or dual-core computer, but it seems to be more frequent in quad-core machines. Normally, Eugenia starts the transformation to generate the models, refreshes the models and then waits for the file indefinitely. I think it would be safer to start generating the models and then refresh and check if the file exists repeatedly, with a slight delay between checks to avoid hogging the CPU.
Fixed in SVN r1497.
Fixed in 0.9.1