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I20110512-2000, already happens in 3.6 This is the GTK version of bug 310387. On Cocoa and on Windows 7, only certain images cause a problem with transparent pixels. But as the testbed in bug 310387 comment 9 and the screenshot in the next comment show, GTK has a problem with all images that have been loaded using the Image(Device device, String filename) constructor and then copied using SnippetBug310387#createCenteredTableItem(String).
With bug 345180, we released a workaround to HEAD of AnnotationsConfigurationBlock, so the original problem is not prominent any more on the preferences page (just the 'Override Indicators' annotation image has a small white rectangle).
Still reproducible on GTK3.22, 4.9 RC2, and Fedora 28.
New Gerrit change created: https://git.eclipse.org/r/139773
*** Bug 103691 has been marked as a duplicate of this bug. ***
Gerrit change https://git.eclipse.org/r/139773 was merged to [master]. Commit: http://git.eclipse.org/c/platform/eclipse.platform.swt.git/commit/?id=e81fd8ac89325d0b32f0e23ada9c871649a5b724 In master now.
The new fix for this bug is addressed in the following patch. Gerrit change https://git.eclipse.org/r/139987 was merged to [master]. Commit: http://git.eclipse.org/c/platform/eclipse.platform.swt.git/commit/?id=2dfa77fb07779dbb9c647dc96a4c6628321df4a3
Verified in I20190403-1800.