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Location returned for each children in /git/clone/... is in format /git/clone/{workspaceId}/{projectId}/{path} and should be /git/clone/[worksapce/file]/path.
Returned Id is wrong as well. It's "{workspaceId}/{projectId}[/{path}]". The first segment can be omitted.
Fixed with http://git.eclipse.org/c/e4/org.eclipse.orion.server.git/commit/?id=12d689441f43cddb1282254705e7b0dc860770cd.