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After upgrading to 0.12.1 it appears that untracked resources (new files withing a folder) no longer mark the parent dirty. This is a regression from 0.11 where it used to work. As a result, I lost data base I didn't recognize new, untracked files after applying and committing a patch.
*** Bug 359268 has been marked as a duplicate of this bug. ***
Ping! Still a problem in 1.2.0.201111271913.
Ping!
*** Bug 326304 has been marked as a duplicate of this bug. ***
*** Bug 366294 has been marked as a duplicate of this bug. ***
Adding my vote for this fix
Fix proposed: http://egit.eclipse.org/r/4952
merged as 6dc11c5c6c7ec4b5e33a8b3ad3cb95be7393d9f9
Verified in 2.0.0.201202221735. I opened bug 372306 to discuss further changes/improvements to this.
*** Bug 344939 has been marked as a duplicate of this bug. ***
*** Bug 347772 has been marked as a duplicate of this bug. ***