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build RC2 -open a Java perspective -move the outline view to the bottom/left, below the package explorer -"customize perspective" and uncheck the entire "Other" category -save the perspective as "MyJava" -move the package explorer to the right of the editor area ->Open the "customize perspective" dialog and notice how some of the "other" action sets are checked again.
Assignning to Platform-UI-INBOX since we are in the process of releasing and we need Nick to aprove any PR before fixing it.
Please investigate to determine whether we need to fix this for 2.1.
Works as expected. When the package explorer is given focus, it has a number of action sets it makes visible if possible (via actionSetPartAssociations extension points). It ends up turning on Java Search, Java Open Actions, and Java Coding because these were not turn off directly by the user. If you open a Java perspective, go to the customize dialog, you'll notice these sets are not on by default. The problem here is actions set have sorta three modes but we only really show 2 modes. You really have on always, off always, and on/off based on active part. It is somewhat related to bug 12216