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The version.sh script needs to be fixed to avoid the problems reported in this change: http://egit.eclipse.org/r/#change,3320,patchset=1 when switching from release version to next snapshot version. Details are in: http://egit.eclipse.org/r/#patch,unified,3320,1,org.eclipse.egit.mylyn-feature/feature.xml http://egit.eclipse.org/r/#patch,unified,3320,1,org.eclipse.egit.ui.test/pom.xml
Is the problem fixed now? If not, please reopen.