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The scale widget on the General tab of Preferences -> Git -> Label Decorations is set to grab excess vertical space making it appear far away from the numbers on at least Linux GTK Ubuntu 10.10
Created attachment 192053 [details] Scale grabbing excess vertical space
Fix pushed to: http://egit.eclipse.org/r/#change,2953
merged as 6213f5c2762e3767ac849867757302d78b8d48c7