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While testing the JS IDE Package from EPP, from http://build.eclipse.org/technology/epp/epp_build/indigo/download/20110315-2111/ When I create a new 'Test' JS Project (in JS Perspective) in fresh install, fresh workspace, I get a message that says something like "Cannot reveal 'Test'. Do you want to remove some filters to reveal the element?" If I say "yes" it shows me the dot (system files and folders); if I say "no" it still reveals the project to me, but does not show the dot files. I tried, and this did not happen with M5. Even with this M6 version, it also did not happen with pain projects, or Java Projects (only other two I tried). I as using 64 bit version to test (though, can't imagine that matters). I was on Windows. I have a hunch you only test existing workspaces with WTP smoke tests, eh? :)
While too late to fix this level of problem for M6 (if others can reproduce) I think it should get a high priority for M7 since it sure makes a bad first impression.
I've confirmed this happens in JEE IDE too ... if and only if the JavaScript perspective is open. Does not happen in JEE perspective.
*** Bug 401877 has been marked as a duplicate of this bug. ***
This seems to be working correctly in WTP 3.5.1. Checked against the 7/18 build.