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I-3.3.0-20110210171157 1. Create a new workspace 2. Go directly to the JavaScript perspective 3. Use the context menu in the Script Explorer to create a new JS project. It doesn't seem to matter what options you choose as long as you Finish the wizard, 4. Expand the project in the explorer view and resources aren't shown at all.
Created attachment 189044 [details] proposed patch
I don't see how to reproduce this problem.
Resolved with bug 334921.