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Non-persistent bi-di refs (*) get inspected during a CommitIntegrityCheck. This gives an IndexOutOfBoundsException when the logic attempts to retrieve the original value for the ref from the clean revision, as a basis for comparison. (Because a non-persistent ref isn't present in the revision.)
Created attachment 186967 [details] Testcases (as a patch)
Created attachment 186968 [details] Patch (including testcase)
Created attachment 187515 [details] Patch v2 - ready to be committed
Committed to trunk, rev. 6931
Available in R20110608-1407