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I had a composite repository like http://download.eclipse.org/eclipse/updates/3.7milestones/ in my list of available sites. Then I needed to check which part of that repository is actually http://download.eclipse.org/eclipse/updates/3.7milestones/S-3.7M3-201010281441 which is a child of the above. The p2 UI refused to work with the child saying it is a duplicate location. (even if it were I'd prefer to work with it anyway). In that state various actions may have queer results. E.g., after removing the parent repo I tried to add the child and still it was reported as duplicate etc. I couldn't recognize the pattern how after a handful of unsuccessful attempts I could finally get the tool to work with the child. Is the visible list of available sites only a filtered view of a flattened invisible list? It seems some of these invisible entries are difficult to manipulate :)
*** This bug has been marked as a duplicate of bug 338495 ***