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In my ecore model I put annotations to describe some features. In the eefgen model, I choose ECOREMODEL as help generation strategy. It looks like EEF sees the annotations but unfortunately it generates help comments for the non-annotated elements.
The Eclipse EEF team has worked over the past few months on a brand new runtime using a reflective approach which can be used more easily with Eclipse Sirius. Since we do not plan to continue to work on the old runtime and its code generation approach, I will close this issue for now. If you want to contribute, you can reopen this issue and submit a contribution to the project thanks to our Gerrit: https://git.eclipse.org/r/#/admin/projects/eef/org.eclipse.eef