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When the console is first opened only the last 100 lines (or so) of the output should be streamed as that portion is likely to contain relevant errors. A button on the console should allow retrieval of the full output.
Mylyn has been restructured, and our issue tracking has moved to GitHub [1]. We are closing ~14K Bugzilla issues to give the new team a fresh start. If you feel that this issue is still relevant, please create a new one on GitHub. [1] https://github.com/orgs/eclipse-mylyn