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When I open the EPackage Registry view, I get 4 ClassCastExceptions for jee.ejbjar EPackages (see attached stacktrace).
Created attachment 176653 [details] stacktrace
I believe I may have borked my Eclipse install (see Bug 323386). I tried with an install of the latest MoDisco nightly on a fresh install of Helios, and I couldn't reproduce the problem. So, marking this as resolved.
Bug not reproducible.