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Having deleted a number of projects (with test cases and runnable applications), I was left with their runtime configurations in the workspace (both in the run menu and also in the run as configuration box). When deleting a project, it would make sense to delete these as well. I have not restarted Eclipse since deleting the projects, so it is possible that a restart would remove these.
At least it could prompt you (personally I might keep them since I could want to delete/reimport projects).
Presumably they are stored in the workspace metadata. Wouldn't it be more beneficial if this kind of information was stored in the per-project metadata (.project) instead of the workspace? That would solve both problems automatically.
Nothing planned for 2.1
This can be marked as a dup of bug 12746.
*** This bug has been marked as a duplicate of 12746 ***
Verified, but added comments into the 'duplicate' to explicitly bring out deletion of a project to remove launch config, rather than a refactoring one of an existing project which is not deleted. Will reopen if the other bug does not fix this specific issue.