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It appears that DSF-GDB doesn't notice the user creating breakpoints using the CLI (which, admittedly, might be rare). This seems to work reasonably in CDI, and is useful when setting breakpoints / watchpoints on symbols not immediately visible to the user in the UI.
James, this is one of the parity issues we unfortunately did not get around to addressing for Helios. *** This bug has been marked as a duplicate of bug 308385 ***