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If you open a persistence.xml that has a lot of classes listed and attempt to 'Synchronize Class List'(via JPA Tools menu) you will notice that this process takes a long time to complete. We do not handle a user attempting to Cancel this process. We should also change the process to make it take less time. We currently delete all the classes from the persistence.xml and then add them all back, we could do better than this.
Moving JPA specific bugs to new JPA component in bugzilla.
Targeting to Juno release.
This has been fixed as well as it's going to be. The job does not take nearly as long as it used to since we have now made it a batch job. You can cancel the process until we hit the code that adds the new specified class refs to the persistence unit context model. At that point we can't pass a progress monitor any further through our change support framework. This means that the "update" of the jpa project will not be cancellable.