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See attached screenshot. You can see that the fact that Ent1 does not exist has been flagged as an error for Association ends, attribute types and extends relationships. However it is not identified as an error for Query return type or Dependency artifact end. To reproduce follow instructions in: https://bugs.eclipse.org/bugs/show_bug.cgi?id=299119
Created attachment 155589 [details] screenshot showing no problems against query and dependency
Fixed and verified.