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Steps to reproduce: 1. Create an EAR 5 project. 2. The "Generate Deployment Descriptor" checkbox (third page) is on by default - leave it as it is. 3. An EAR 5 project without application.xml is created. 4. Create an EJB 3 project. 5. Select "Add project to an EAR" and point to the previously created EAR 5 project. 6. The "Generate Deployment Descriptor" checkbox is off - leave it as it is. 7. An EJB 3 project with ejb-jar.xml is created. The EJB 3 project should be created _without_ the ejb-jar.xml file. If step 5 is omitted the EJB 3.0 project is created properly without the ejb-jar.xml file. This problem is reproduced with the 3.0 M1 build that is under smoke test now and with the latest 2.0.1 I-build. This bug looks very similar to bug 200967.
*** This bug has been marked as a duplicate of bug 200967 ***
Verified with WTP 2.0.1 RC1.
Closing