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In our code we use "is" methods of J2EEProjectUtilities to determine the type of specific project (DynamicWebProject, EJB project, etc). Since this is a rather common operation we believe that that functionality should be supported by external API.
We'd like to see J2EEProjectUtilities made a public API as well. We use the same "is" methods described above.
The proper path for API finalization should refactor any methods out of J2EEProjectUtilities and into another class with well defined dependencies that doesn't pull along alot of other plugins, as J2EEProjectUtilities can do.
We would like to use isDynamicWebProject and isProjectOfType as well. We have our own custom facet for a web project. These methods allow us to quickly verify the project contains our prerequisites.
Use JavaEEProjectUtilities. It is public API.