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In the properties of the genmodel I could imagine a setting in the section "Templates and Merge" that allows to recompile the JET templates each time the generator is called. Recompilation might be quite expensive and hence slow down the generation process, but it probably is even slower and definitly more annoying to reopen the generator every time. This issue is also discussed in the EMF newsgroup thread "Re: Dynamic Templates - What can I expect to happen", February 8th.
This was addressed in bug 75925. Dynamic templates will now be rebuilt each time you generate code. Unfortunately, there was a bug in the code I committed yesterday (that's in RC2), so that they were rebuilding for each instance of each model element (e.g. for each class) within a single code generation operation), but I've just fixed that in CVS.
Move to verified as per bug 206558.