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Probkem with Eclipse 3.1 and CDT 3.0: Create a C Managed Make project where project type is Executable (Gnu on windows). Create a source folder, and a source file under this source folder. Build the project for the debug configuration. The application binary is created and is recognized as a executable binary. Select the release configuration and build it. The binary is created and not recognized as a binary executable but the debug one is now recognized as executable. This problem seems to appear only when a source folder is created.
(this is part of a batch change) The CDI debug implementation has been removed in CDT 9.0. Please see bug 484900 and the entry on the New and Noteworthy page https://wiki.eclipse.org/CDT/User/NewIn90#API_modifications