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After running an application or simple java main, I can see shortly that the console displays my programs output, but the output is replaced by a grey panel with the title "A console is not available". Strangely this happens most of the time directly after a compilation or background build or if I start the application without saving the modified source. A second run of the same application is displaying the expected console.
Workaround is to turn on "always run in background" preference on the General preference page. *** This bug has been marked as a duplicate of 100700 ***